Calculate Reef-level Disturbance Levels

Usage

calculate_reef_disturbances(
  spatial_grid,
  spde,
  all_effects_disturb,
  data_reefs_df,
  data_reefs_sf,
  reefs_poly_sf,
  config_sp
)

Arguments

spatial_grid: An sf object of spatial points representing the full grid.
spde: A list containing the SPDE mesh and related projection matrices.
all_effects_disturb: A matrix of disturbance effects on the link scale.
data_reefs_df: A data.frame of reef sample points (Longitude, Latitude).
data_reefs_sf: An sf object of the reef sample points.
reefs_poly_sf: An sf polygon object of reef boundaries.
config_sp: A list containing configuration options, including years.

Value

A list containing:

data_reefs_sample_disturb – Sample-level disturbance values.
data_reefs_disturb – Reef-level disturbance values in long format with Year and Value.
data_reefs_pts_disturb_sf – Reef-level disturbance values as an sf object.

Details

Calculates reef-level disturbance levels by projecting the spatial grid disturbance field (e.g., thermal stress, cyclones, other impacts) onto reef sample points and aggregating values for each reef. Returns both tabular and sf representations.

Author

Murray