manecsummary
of models fitted with the brms packageR/manecsummary-class.R
manecsummary-class.Rd
Multiple models fitted with the
bayesnec
package are summarised
as a manecsummary
object, which contains the name of the
non-linear models fitted, the family distribution used
to fit all the models, the total post-warm-up sample size, a table
containing the model weights, the method to calculate the weights,
whether this model is an ECx-type model
(see details below), and the ECx summary values should the user decide
to calculate them.
See methods(class = "manecsummary")
for an overview of available
methods.
models
A character
string indicating the name of
the fitted non-linear models.
family
A list
indicating the
family distribution and link function used to fit all the models.
sample_size
The total post-warm-up sample size.
mod_weights
A table containing the model weights.
mod_weights_method
The method to calculate the weights.
ecx_mods
A logical
indicating which models
are ECx-type models.
nec_vals
The model-averaged NEC values. Note that if model stack contains ECx-type models, these will be via NSEC proxies.
ecs
A list
containing the ECx values
should the user decide to calculate them (see the non-exported
bayesnec:::summary.bayesnecfit
help file for details). Different
from the single-model case of class bayesnecfit
, these ECx
estimates will be based on the model weights.
bayesr2
A table containing the Bayesian R2 for all models, as
calculated by bayes_R2
.
rhat_issues
A list
detailing whether each fitted
model exhibited convergence issues based on the Rhat evaluation.
Fisher R, Fox DR (2023). Introducing the no significant effect concentration (NSEC).Environmental Toxicology and Chemistry, 42(9), 2019–2028. doi: 10.1002/etc.5610.
Fisher R, Fox DR, Negri AP, van Dam J, Flores F, Koppel D (2023). Methods for estimating no-effect toxicity concentrations in ecotoxicology. Integrated Environmental Assessment and Management. doi:10.1002/ieam.4809.
Fox DR (2010). A Bayesian Approach for Determining the No Effect Concentration and Hazardous Concentration in Ecotoxicology. Ecotoxicology and Environmental Safety, 73(2), 123–131. doi: 10.1016/j.ecoenv.2009.09.012.