Produces a coloured tile plot of a vertical slice already fetched from an eReefs or other EMS netcdf file.

Relies on output from get_ereefs_slice().

plot_ereefs_slice(
  slice,
  var_name = "Chl_a_sum",
  scale_col = "spectral",
  scale_lim = NA,
  var_units = ""
)

Arguments

slice: A list object as output by get_ereefs_slice(), containing dates, eta, z_grid, botz, a data frame of values and a data frame of latitudes and longitudes
scale_col: Vector of colours to use for low and high values in the colour scale. This can be a colour from the ggplot colour palette or a RGB hash code, or "spectral". Ignored for true_colour plots. Example: c('ivory', 'coral4'). If one value is given (other than "spectral"), low colour is set to ivory and high colour to the value given. If three values are given, uses scale_fill_gradient2 (spectrum from low to high through middle value). Defaults to "spectral"
scale_lim: values for low and high limits of colourscale. Defaults to full range.

p handle for the generated figure