Package index • synthos

All functions

baseline_hard_coral_cover(): Baseline Hard Coral Cover
baseline_soft_coral_cover(): Baseline Soft Coral Cover
calculate_reef_disturbances(): Calculate Reef-level Disturbance Levels
calculate_reef_hcc(): Calculate Reef-level Hard Coral Cover
calculate_reef_ma(): Calculate Reef-level Macroalgae Cover
calculate_reef_sc(): Calculate Reef-level Soft Coral Cover
combine_reef_benthos(): Combine Reef-level Benthos Data
combine_reef_disturbances(): Combine Reef-level Disturbance Data with Benthos
create_spde(): Create a mesh and SPDE
create_spde_matern(): Create SPDE Matern Components
create_spde_mesh(): Create SPDE Mesh
create_synthetic_reef_landscape(): Create Synthetic Reef Landscape with Benthos and Disturbances
disturbance_all(): All Disturbance Layers
disturbance_cyc(): Cyclones Disturbance Layer
disturbance_dhw(): Degree Heating Weeks Disturbance Layer
disturbance_other(): Other Disturbance Layer
generateSettings(): Generate Settings for Synthetic Reef Simulations
generate_field(): Generate a random field
generate_patches(): Generate simulated patches
generate_reefs(): Generate simulated reefs
plot_group(): Plot Time Series of Coral Cover by Group and Depth
plot_map(): Benthic COVER_site Heatmap
plot_synthos(): Plot Benthic Cover Dynamics
pointify_polygons(): Pointify polygons
prepare_table(): Prepare Synthetic Data Table
sample_years_with_condition(): Constrained Year Subsampling
sampling_design_fine_scale_cover(): Fine-Scale Percent Cover
sampling_design_fine_scale_fixed(): Generate Fine-Scale Sampling Design (Fixed)
sampling_design_fine_scale_points(): Generate Fine-Scale Photo-Point Observations
sampling_design_fine_scale_random(): Generate Fine-Scale Sampling Design (random)
sampling_design_large_scale_fixed(): Large‐scale fixed sampling design
sampling_design_large_scale_random(): Large‐scale Randomised Sampling Design
select_process_reefs(): Select and Process Synthetic Reefs
spatial_grid_sfc_to_df(): Convert sf Geometry to Data Frame
synthetic_field_hcc(): Synthetic Hard Coral Cover Field
synthetic_field_sc(): Synthetic Soft Coral Cover Field