Setup Python

Following along with tutorials in Python

Learn how to setup Python and follow along with the eReefs tutorials.

Install Python

TODO

Install dependencies

Install Conda

wget --quiet https://repo.anaconda.com/miniconda/Miniconda3-py38_23.5.2-0-Linux-x86_64.sh -O miniconda.sh
/bin/bash miniconda.sh

Install Python dependencies using Conda

~/miniconda3/bin/conda install -n base conda-libmamba-solver
~/miniconda3/bin/conda config --set solver libmamba
~/miniconda3/bin/conda install jupyter
~/miniconda3/bin/conda install -c conda-forge netcdf4=1.5.8 pandas=1.4.2 pyjanitor=0.27.0 folium=0.16.0 cartopy=0.21.1 pip=24.0

# Can't install from conda, package version 3.7.5 not available, version 3.10.1 conflict with a lot of other libraries
~/miniconda3/bin/conda install -c conda-forge matplotlib==3.10.1

# Can't install with Python3 pip, it requires a venv which RStudio won't be able to find.
python3 -m pip install --force-reinstall matplotlib==3.7.5

Install Python

Install dependencies

Use RStudio to run the Python tutorials